Quick Start

Cain comes with a collection of example data files in the examples folder. (Besides being packaged with the application, the examples are available as a separate download.) Open one of these files, examples/cain/BirthDeath.xml for example. (The birth/death model is presented in the examples section.) You will see lists of the defined models and methods in the first two panels. When you select a model, its species, reactions, etc. are shown in the model editor panels in the bottom two rows of the application window. Select a model and a method. Then select the species and/or reactions to record. You can generate a suite of trajectories with the launch button   in the launcher frame. A description of the output will appear in the top, right panel.

Play around with the buttons and panels. Most of the text labels and buttons have tool tips describing their functionality. Just pause the cursor over an object to see what it does. Hopefully, most of the widgets do what you expect. Note that you must have a model and a method selected in order to launch a simulation. When you get stuck or confused, come back here and continue reading this manual.

Note that there are horizontal splitters between the rows of panels, and also vertical splitters between the model editor panels. These appear differently on each operating system. On Mac OS X, splitters are indicated with what appears to be a small indentation at their centers. You can click and drag the splitters to change the ratio of space allocated to the rows and panels.