Cain Help Index
Welcome
Installation
Mac OS X
Microsoft Windows
Linux/Unix
RedHat/CentOS 6.0
RedHat/CentOS 5.6
Fedora 16
Fedora 15
Debian 6
Debian 5
Ubuntu 12
Ubuntu 11
User's Guide
Quick Start
Model List
Method List
Method Editor
Recorder
Launcher
Simulation Output
Species Editor
Reaction Editor
Compartment Editor
Time Events Editor
Trigger Events Editor
Parameter Editor
Tool Bar
Solvers
Mathematical Expressions
Examples
Birth-Death
Immigration-Death
Lac Operon
Chaperones Role in Ageing
DSMTS
Birth-Death
Immigration-Death
Dimerization
Batch Immigration-Death
SAfSB
Chapter 2
Chapter 5
Simulation Methods
Discrete Stochastic Simulations
Direct Method
First Reaction Method
Next Reaction Method
Tau-Leaping
SAL Tau-Leaping
Direct Method with Time-Dependent Propensities
Hybrid Direct/Tau-Leaping
ODE Integration
Visualization and Analysis
Plotting Time Series Data
Plotting Histograms
Tables
Histogram Distance
Significance Testing
Exporting Data
Exporting to R
Single Trajectory
Multiple Trajectories
Probability Distributions
Performance
Exact Methods
Developer's Guide
Command Line Solvers
File Formats
Documentation
Distributions
Cain XML File Format
Models
Methods
Output
Random Numbers
License
FAQ
Links
Bibliography
Acknowledgments
Known Issues
To Do